DIRENZO LAB @ THE MA CRU
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Code

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On this page, you will find two things:

        (1) Code used in my research
                     - Simulations
                     - JAGS model code

                     - Bayesian posterior-predictive checks

        (2) Course materials developed by others and myself

Please feel free to use and distribute, but cite the source appropriately

Code used in my research


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Data requirements for an occupancy study in the diverse tropics 

Objective: To determine how many sites to survey and how many surveys per site is adequate in a diverse community
Code: Learn to simulate and analyze data for species that range in occupancy and detection probability
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Multi-state disease structured N-mixture model

Objective: To estimate survival and population growth for a population of unmarked individuals that differ in infection status
Code: Learn to simulate and analyze data for a stage-structured (i.e., age, size, sex, or any other discrete category) population when marking individuals is not possible
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Multi-state Jolly-Seber model

 Objective: To estimate survival and population growth for a population of marked individuals that differ in infection status
Code: Learn to simulate and analyze capture-mark-recapture data for a stage-structured (i.e., age, size, sex, or any other discrete category) population
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​Course materials from others and myself

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Bayesian hierarchical modeling at SESYNC

Course materials for the SESYNC Bayesian modeling for ecologists and social scientists short course. Material was created by Dr. Tom Hobbs, Dr. Chris Che-Castaldo, and Dr. Mary Collins.
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Open science and research reproducibility by Dr. Christie Bahlai

Course materials for an open science and reproducible research course targeted at organismal ecologists. Material was created by Dr. Christie Bahlai.
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Introduction to R course by Alex Forde and myself

Under construction....
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  • Home
  • Publications
  • Lab Members
  • Grad school
  • Prospective students
  • Job postings
  • Ethics
  • Code
  • Contact